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Link to bioRxiv paper:
http://biorxiv.org/cgi/content/short/2022.11.28.518239v1?rss=1
Authors: Coopman, E., Van den Broeck, M., De Pooter, T., Joris, G., Dickson, D. W., Strazisar, M., Rademakers, R., De Coster, W.
Abstract:
Methylmap is a tool developed for the visualization of modified nucleotide frequencies per position, especially for large numbers of samples. Various input possibilities are supported, including the standardized BAM/CRAM files containing MM and ML tags. Availability and implementation Methylmap is written in Python3 and available through PyPI and bioconda. The source code is released under MIT license and can be found at https://github.com/EliseCoopman/methylmap.
Copy rights belong to original authors. Visit the link for more info
Podcast created by Paper Player, LLC
http://biorxiv.org/cgi/content/short/2022.11.28.518239v1?rss=1
Authors: Coopman, E., Van den Broeck, M., De Pooter, T., Joris, G., Dickson, D. W., Strazisar, M., Rademakers, R., De Coster, W.
Abstract:
Methylmap is a tool developed for the visualization of modified nucleotide frequencies per position, especially for large numbers of samples. Various input possibilities are supported, including the standardized BAM/CRAM files containing MM and ML tags. Availability and implementation Methylmap is written in Python3 and available through PyPI and bioconda. The source code is released under MIT license and can be found at https://github.com/EliseCoopman/methylmap.
Copy rights belong to original authors. Visit the link for more info
Podcast created by Paper Player, LLC
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Link to bioRxiv paper:
http://biorxiv.org/cgi/content/short/2023.08.04.551958v1?rss=1
Authors: Courtney, E., Datta, A., Mathews, D. H., Ward, M.
Abstract:
Determining RNA secondary structure is a core problem in computational biology. Fast algorithms for predicting secondary structure are funda…
Link to bioRxiv paper:
http://biorxiv.org/cgi/content/short/2023.08.01.551396v1?rss=1
Authors: Liu, S., Yu, J., Ni, N., Wang, Z., Chen, M., Li, Y., Xu, C., Bai, Q., Ding, Y., Wang, C., Zhang, J., Yao, X., Liu, H.
Abstract:
Predicting drug-target interaction (DTI) is a critical and rate-limiting…
Link to bioRxiv paper:
http://biorxiv.org/cgi/content/short/2023.08.04.410498v1?rss=1
Authors: Dick, K., Green, J. R.
Abstract:
No. While our experiments ultimately failed, this work was motivated by the seemingly reasonable hypothesis that encoding protein sequences as a fractal-based image in…
Link to bioRxiv paper:
http://biorxiv.org/cgi/content/short/2023.08.01.551468v1?rss=1
Authors: Mukashyaka, P., Sheridan, T. B., Foroughi pour, A., Chuang, J. H.
Abstract:
Deep learning has revolutionized digital pathology, allowing for automatic analysis of hematoxylin and eosin (H&E) stain…
Link to bioRxiv paper:
http://biorxiv.org/cgi/content/short/2023.07.31.551395v1?rss=1
Authors: Xu, Z.
Abstract:
Background: Idiopathic pulmonary fibrosis (IPF) is a chronic and progressive lung disease characterized by excessive scarring of lung tissue. Recent studies have indicated a potential…
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