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From the moment Cisco and VMware announced VXLAN some networking engineers complained that they'd lose visibility into the end-to-end path. It took a long while, but finally the troubleshooting tools started appearing in VXLAN environment: NVO3 working group defined Fault Managemnet framework for overlay networks and Cisco implemented at least parts of it in recent Nexus OS releases.
You'll find more details in Software Gone Wild Episode 69 recorded with Lukas Krattiger in November 2016 (you can also watch VXLAN Technical Deep Dive webinar to learn more about VXLAN).
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